Pattern Matching: Organic Molecules What are living things made of? Common sense tells us that living things are somehow different from non-living things, but how deep does that difference run? There may be as many as 10,000 different kinds of molecules in a living thing. But are there a few common patterns, a few common functions? Objectives: Once you have completed these exercises you should be able to: ● Know what an organic molecule is and how it differs from an inorganic molecule. ● Identify the major classes of organic molecules. ● Identify the distinguishing features of each class of molecules. ● Given a typical example of an organic molecule, identify the class to which it belongs.
Pattern Matching Table 1 reviews the most common atoms found in living organisms and some of their properties. (These atoms also occur in non-living things.) As you work, notice if the atoms in your molecules follow the indicated bonding patterns. Table 1. CHNOPS: Common Elements in Living Things
Abbreviation
Name
Atomic Number
Atomic Weight
Usual # of Bonds
C
carbon
6
12
4
H
hydrogen
1
1
1
N
nitrogen
7
14
3
O
oxygen
8
16
2
P
phosphorus
15
30
5
S
sulfur
16
32
2, [4, 6]
Identifying Categories of Biological Molecules TASK 1 Organize the 42 cards into groups based upon structural similarities and put on poster paper. Pay special attention to: •
the elements (CHNOPS) in the molecule,
•
the shape of the molecule,
•
patterns within the molecule, and
•
the ends of the molecule.
On the back of this page write describe each of the groups in complete sentences. (Quick sketches of general molecule shapes can be part of your explanations.)
Group
# Description of characteristics molecules in molecules group
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basis of the degree of linkage between expected and achieved outcomes. In light of this ... al scaling, and cluster analysis as well as unique graphic portrayals of the results .... Pattern match of program design to job-related outcomes. Expected.
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the following string-matching problem: For a specified set. ((X(i), Y(i))) of pairs of strings, .... properties of our algorithms, even if the input data are chosen by an ...
such as traffic classification, application identification and intrusion prevention. In this paper, we ..... OCTEON Software Developer Kit (Cavium SDK version 1.5):.
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We present a universal algorithm for the classical online problem of caching or ..... Call this the maximal suffix and let its length be Dn. 2. Take an α ..... Some Distribution-free Aspects of ... Compression Conference, 2000, 163-172. [21] J. Ziv
XML employs a tree-structured data model, and, naturally,. XML queries specify .... patterns is that intermediate result sizes can get very large, even when the input and ... This validates the analytical results demonstrat- ing the I/O and CPU ...
possible to create a table of aliases for domain- specific alphanumeric values, however, it is unlikely that all possible errors could be anticipated in advance. 2.
Dec 4, 2007 - accommodate the increasing number of attack patterns and meet ... omitted. States 4 and 8 are the final states indicating the matching of string ...
Dec 30, 2004 - gait, facial thermo-gram, signature, face, palm print, hand geometry, iris and ..... [3] R. C. Gonzalez and R. E. Woods, Digital Image. Processing.
1Department of Automation, Tsinghua University, Beijing, 100084, China. ... of-art 16-MIPS-core network processing platform and evaluated with real-life data ...
matching is to increase automated record linkage. Valid linkages will be determined by the user and should represent those ânear matchesâ that the user.
NFA approaches, a content matching server [9] was developed to automatically generate deterministic finite automatons (DFAs) .... construct an NFA for a given regular expression and used it to process text characters. ... [12] adopted a scalable, low
the pattern's fingerprint (Kp(X) or Fp(X)), 3) computing all the fingerprints ... update fingerprints instead of computing from scratch: ... blocks (virtualized cores).
scalability has been a dominant issue for implementation of NIDSes in hardware ... a preprocessing algorithm and a scalable, high-throughput, Memory-effi-.
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Jan 13, 2005 - leaves. Then, this pattern is compared with all the phylogenetic trees of the database, to retrieve the families in which one or several occur- rences of this pattern are found. By specifying ad hoc patterns, it is therefore possible t
Dec 4, 2007 - [email protected]. ABSTRACT. Due to the ... To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior.
They are critical net-work security tools that help protect high-speed computer ... Most hardware-based solutions for high-speed string matching in NIDS fall into ...
matching approaches can no longer meet the high throughput of .... high speed. Sourdis et al. ... based on Bloom filter that provides Internet worm and virus.
intrusion detection system must have a memory-efficient pat- tern-matching algorithm and hardware design. In this paper, we propose a memory-efficient ...