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Jun 24, 2010 - and test a CG interaction potential of general utility for the simulation of proteins of arbitrary ... in any medium, provided the original author and source are credited. ...... alternative explanation is that the reduced bulk of the
statistical methods for mining knowledge from texts and biomedical data mining. ..... the Internet with the keyword âprotein-protein interactionâ. Corpuses I and II ...
Existing statistical approaches to this problem include sliding-window methods (Bakiri and Dietterich, 2002), hidden Markov models (Rabiner, 1989), maximum ..... MAP estimation methods investigated in speech recognition experiments (Iyer et al.,. 199
a few big known protein complexes that have clearly defined interactions ... comparison to random pairs, while in the other three species only slightly ... ing results from gene expression data has been proposed. Since .... Term Database.
datasets and the limited information available about their methods. 2 Data. A gene-interaction .... from textâis text mining ready to deliver? PLoS Biol, 3(2).
using 10-fold cross-validation. Performance will be measured using Recall, Precision and F1. 3 Experiments. Each possible combination of proteins and iWords.
References. C. Blaschke and A. Valencia. 2002. The frame-based module of the suiseki information extraction system. IEEE Intelli- gent Systems, (17):14â20.
School of Computer Engineering, Nanyang Technological University, ... of extracting important fields from the headers of computer science research papers. .... reranking, the top ranked parse is processed to extract protein-protein interactions.
School of Computer Engineering, Nanyang Technological University, ... different models, log-linear regression (LLR), neural networks (NNs) and support vector .... reranking, the top ranked parse is processed to extract protein-protein ...
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Performance is usually assessed using 10 fold CV. ⢠Robustness typically not ... 12. Distant supervision. ⢠Manual annotation is labor intensive and tedious.
