Case Study | Google Compute Engine

Cancer Investigators Use Google Compute Engine to Accelerate Life-Saving Research

At a Glance What they wanted to do ȏ $FFHOHUDWHDQDO\VLVRIODUJHFDQFHUGDWDVHWV ȏ 5HGXFHWKHWLPHWRVFDOHXSWRJDLQ DGGLWLRQDOFRPSXWLQJSRZHU ȏ 8VHRSHQVWDQGDUGVWRDOORZUHVHDUFKHUV WRHPSOR\WKHFRPSXWLQJWRROVWKH\SUHIHU What they did ȏ &KRVH*RRJOH&RPSXWH(QJLQHWRKDUQHVV YLUWXDOFRPSXWLQJSRZHUIURP*RRJOHȇV PDVVLYHGDWDFHQWHU ȏ :RUNHGZLWK*RRJOHWRLGHQWLI\FRPSOH[ UHODWLRQVKLSVZLWKLQGDWDVHWV ȏ 8VHGLQVLJKWVJDLQHGWKURXJK&RPSXWH (QJLQHWRJXLGHUHVHDUFK What they accomplished ȏ *UHDWO\UHGXFHGWKHWLPHQHHGHGWR DQDO\]HDFDQFHUGDWDVHW ȏ $FFHVVHGSRZHUIXOFRPSXWDWLRQDO FDSDELOLWLHVZLWKRXWDGGLQJKDUGZDUH ȏ $QWLFLSDWHXVLQJWKHWLPHVDYLQJVWR DFFHOHUDWHWKHSDFHRIPHGLFDOGLVFRYHU\

Organization 7KHQRQSURȴW,QVWLWXWHIRU6\VWHPV%LRORJ\LVRQHRIWZRGR]HQUHVHDUFK FHQWHUVWDNLQJSDUWLQDQDWLRQDOSURMHFWWRPDSJHQHWLFFKDQJHVLQW\SHV RIFDQFHU8VLQJ*RRJOH&RPSXWH(QJLQHUHVHDUFKHUVDUHDEOHWRWDSLQWR WKHYDVWFRPSXWDWLRQDOSRZHURI*RRJOHȇVGDWDFHQWHUWRDQDO\]HFRPSOH[ FDQFHUGDWDVHWVLQDIUDFWLRQRIWKHWLPHVSXUULQJKRSHWKDWQHZWUHDWPHQWV DQGFXUHVFDQEHIRXQGPRUHTXLFNO\ Challenge $QDO\]LQJFDQFHUGDWDVHWVLVDWLPHFRQVXPLQJWDVNIRUUHVHDUFKHUVDW WKH,QVWLWXWHIRU6\VWHPV%LRORJ\HYHQZLWKWKHRUJDQL]DWLRQȇVVLJQLȴFDQW FRPSXWLQJLQIUDVWUXFWXUH$QDO\VHVPD\WDNHVHYHUDOKRXUVGD\VRUHYHQ ZHHNVWRFRPSOHWHEHFDXVHRIWKHVFDOHDQGFRPSOH[LW\RIWKHGDWD7KH UHVHDUFKHUVNQHZWKDWDSRZHUIXOFORXGEDVHGFRPSXWDWLRQWRROFRXOG VSHHGWKHLUZRUNWUHPHQGRXVO\RQ7KH&DQFHU*HQRPH$WODVSURMHFWD MRLQWLQLWLDWLYHRIWKH1DWLRQDO&DQFHU,QVWLWXWHDQG1DWLRQDO+XPDQ *HQRPH5HVHDUFK,QVWLWXWH Ȋ6KRUWHQLQJWKHFRPSXWLQJWLPHZRXOGDOORZRXUVFLHQWLVWVWRH[SORUH DGGLWLRQDOK\SRWKHVHVDQGPDNHRXUUHVHDUFKPRUHH΍HFWLYHȋH[SODLQV ,6%VRIWZDUHDUFKLWHFW+HFWRU5RYLUD 5RYLUDDQG,O\D6KPXOHYLFKDSURIHVVRUDWWKHLQVWLWXWHDQGDSULQFLSDO LQYHVWLJDWRUZLWKLQWKHJHQRPHSURMHFWKDGDOUHDG\XVHG*RRJOH$SS (QJLQHDQGRWKHU*RRJOHVHUYLFHVDQGZHUHLPSUHVVHGE\WKHHDVHRI XVHVHFXULW\DQGRSHQVWDQGDUGV%XWWKH\ZHUHZRUULHGWKDWJDLQLQJ WKHDGGLWLRQDOFRPSXWLQJFDSDFLW\FRXOGUHTXLUHFRQVLGHUDEOHH΍RUW

“Google Compute Engine is just part of what we see as a whole new ZD\IRUVFLHQWLVWVDURXQGWKHZRUOGWRZRUNPRUHH΍HFWLYHO\LQWKH cloud, not only by accessing powerful computational resources, but by collaborating more easily on complex research.” ȃ+HFWRU5RYLUDVRIWZDUHDUFKLWHFWDWWKH,QVWLWXWHIRU Systems Biology

Solution 5RYLUDDQG6KPXOHYLFKWKHQKHDUGDERXW*RRJOH&RPSXWH(QJLQHZKLFK XVHVYLUWXDOPDFKLQHVKDUQHVVHGE\*RRJOHȇVGDWDFHQWHUWRVROYHELJ FRPSXWLQJSUREOHPV7KH\VWDUWHGDQDO\]LQJWKHLUGDWDRQWKHV\VWHP LQ)HEUXDU\ZLWKKHOSIURP*RRJOHȇV&RPSXWDWLRQDO'LVFRYHU\

About Google Compute Engine

*RRJOH&RPSXWH(QJLQHDOORZVGHYHORSHUV WRKDUQHVVWKHVFDOHDQGHɝFLHQF\RIWKH *RRJOHGDWDFHQWHU,WR΍HUVVLPSOH\HW SRZHUIXOFOXVWHUVRIYLUWXDOPDFKLQHVWR VROYHELJFRPSXWLQJSUREOHPVZKLOH VXSSRUWLQJRSHQVWDQGDUGVDQGVWURQJ VHFXULW\DQGSULYDF\FRQWUROV )RUPRUHLQIRUPDWLRQYLVLW http://cloud.google.com/compute Ȋ8QWLOQRZZHKDYHQȇWKDGDZD\WRZRUNZLWK ELJGDWDVHWVDVH΍HFWLYHO\DVZLWK*RRJOH &RPSXWH(QJLQH+DYLQJDWRROWKDWOHWV UHVHDUFKHUVJHWDQVZHUVIDVWZLOOKDYHD major impact on our work.” ȃ,O\D6KPXOHYLFKSURIHVVRUDWWKH,QVWLWXWH IRU6\VWHPV%LRORJ\DQGDSULQFLSDOLQYHVWLJDWRU in The Cancer Genome Atlas project

'HSDUWPHQW7KHLQVWLWXWHVHQGVWKH*RRJOHWHDPGDWDVHWVFRQWDLQLQJ SXEOLFO\DYDLODEOHFOLQLFDOLQIRUPDWLRQDQGJHQRPLFPHDVXUHPHQWVIURP WKHSURMHFWȇVSDWLHQWSRSXODWLRQȂIRUH[DPSOHLQIRUPDWLRQRQ'1$PXWDWLRQV LQDFDQFHUFHOO*RRJOHWKHQORDGVWKHGDWDLQWR&RPSXWH(QJLQHDQGWKH DQDO\VLVKHOSVJXLGHWKHLQVWLWXWHȇVUHVHDUFK7KH*RRJOHWHDPDOVRDQDO\]HG ,6%ȇVGDWDXVLQJ([DF\FOHDQH[SHULPHQWDO*RRJOHV\VWHPWKDWDOVRR΍HUV UHVHDUFKHUVIDVWODUJHVFDOHGDWDDQDO\VLV %HFDXVH*RRJOH&RPSXWH(QJLQHFDQUDSLGO\VWDUWXSDQGVKXWGRZQYLUWXDO PDFKLQHVLWKDVUHGXFHGFRPSXWDWLRQWLPHVVLJQLȴFDQWO\Ȋ:HȇYHEHHQUHDOO\ LPSUHVVHGE\WKHVSHHGȋ6KPXOHYLFKVD\VȊ:HFDQDOUHDG\VHHKRZLWVIDVW FRPSXWDWLRQF\FOHVZLOOKHOSXVZRUNIDVWHUDQGSRWHQWLDOO\H[SORUHPRUH DUHDVRIUHVHDUFKȋ Results 8VLQJ*RRJOH&RPSXWH(QJLQHUHVHDUFKHUVKDYHWDSSHGLQWR*RRJOHȇV SRZHUIXOFRPSXWDWLRQDOUHVRXUFHVZLWKRXWEX\LQJDGGLWLRQDOKDUGZDUH 7KHV\VWHPKDVDQDO\]HGDFDQFHUGDWDVHWLQWZRKRXUVFRPSDUHGZLWK KRXUVRQWKHLQVWLWXWHȇVLQWHUQDOV\VWHP&RPSXWH(QJLQHLVEXLOWRQ RSHQVWDQGDUGVVRXVHUVFDQHPSOR\WKHFRPSXWLQJWRROVWKH\OLNHEHVW ZKHQGRLQJWKHLUUHVHDUFK Ȋ8QWLOQRZZHKDYHQȇWKDGDZD\WRZRUNZLWKELJGDWDVHWVDVH΍HFWLYHO\DV ZLWK*RRJOH&RPSXWH(QJLQHȋ6KPXOHYLFKVD\VȊ$WRROWKDWOHWVUHVHDUFKHUV DQDO\]HGDWDDQGJHWDQVZHUVTXLFNO\ZLOOKDYHDPDMRULPSDFWRQRXUZRUNȋ 6KPXOHYLFKDQG5RYLUDVD\*RRJOH&RPSXWH(QJLQHPD\KHOSSURYLGH YDOXDEOHLQVLJKWLQWRWKHSURJUHVVLRQRIFDQFHUDQGLPSURYHWKHUHVHDUFKHUVȇ DELOLW\WRSUHGLFWKRZSDWLHQWVZLOOUHVSRQGWRGUXJV(YHQPRUHLPSRUWDQWO\ WKH\H[SHFWLWWRSOD\DNH\UROHLQWUDQVIRUPLQJKRZVFLHQWLȴFUHVHDUFKLV GRQHE\XVLQJLWDORQJZLWKRWKHU*RRJOHVHUYLFHV Ȋ*RRJOH&RPSXWH(QJLQHLVMXVWSDUWRIZKDWZHVHHDVDZKROHQHZZD\ IRUVFLHQWLVWVDURXQGWKHZRUOGWRZRUNPRUHH΍HFWLYHO\LQWKHFORXGQRW RQO\E\DFFHVVLQJSRZHUIXOFRPSXWDWLRQDOUHVRXUFHVEXWE\FROODERUDWLQJ PRUHHDVLO\RQFRPSOH[UHVHDUFKȋ5RYLUDVD\V

k*RRJOH,QF$OOULJKWVUHVHUYHG*RRJOHDQGWKH*RRJOHORJRDUHWUDGHPDUNVRI*RRJOH,QF $OORWKHUFRPSDQ\DQGSURGXFWQDPHVPD\EHWUDGHPDUNVRIWKHUHVSHFWLYHFRPSDQLHVZLWKZKLFKWKH\DUHDVVRFLDWHG 66

Cancer Investigators Use Google Compute Engine to Accelerate Life ...

ZD\ IRU VFLHQWLVWV DURXQG WKH ZRUOG WR ZRUN PRUH H΍HFWLYHO\ LQ WKH cloud, not only by accessing powerful computational resources,.

72KB Sizes 1 Downloads 85 Views

Recommend Documents

Google Compute Engine – computation in the ... Cloud Platform
Google Compute Engine lets you run large-scale computing workloads on the ... Google Cloud Storage Easily access your Google Cloud Storage data buckets ...

SQL Server Performance Tuning on Google Compute Engine
How to tweak your SQL Server based on the performance metrics you're ... good idea about what you'll need to provision elsewhere to get equivalent or ... requirements and set up enough additional space to comfortably hold data one ..... If you've bui

Private Investigators Practice Act.pdf
Whoops! There was a problem loading this page. Private Investigators Practice Act.pdf. Private Investigators Practice Act.pdf. Open. Extract. Open with. Sign In.

life, cancer and virtual information1
3. Individual data of human birth. 4. Carcinogenesis according to the model of ... of God”, known as genetic code, or even already in the process of research calling the ... interact in such a way that the first object influences the other, and the

life, cancer and virtual information1
there can be no successful course of pregnancy, because nothing can .... individual clinical data has led for the need to combat “obstetric terrorism” because .... percentage chance of recovery or a death date, e.g. month, for two or three years.

cancer care for life(3rd series) - Akshayaace
I/We agree to abide by the rules and conditions laid in the prospectus for the 'Cancer Care for life' scheme offered by the Regional Cancer Centre, ...

cancer care for life(3rd series) - Akshayaace
CANCER CARE FOR LIFE(3RD SERIES). Application Form for Membership. Applied for : Plan A / Plan B. Application No:………………….. Membership Amount.

Accelerate application development - Services
Google Cloud Platform helps free you from managing infrastructure, so that you can focus on building amazing applications that engage and delight your users. Accelerate application development. Related Products. • App Engine. • Cloud Developer To

An Efficient Geometric Algorithm to Compute Time ... - IEEE Xplore
An Efficient Geometric Algorithm to Compute Time-optimal trajectories for a Car-like Robot. Huifang Wang, Yangzhou Chen and Philippe Sou`eres.

Hispanics and Pancreatic Cancer: Things to know - National Cancer ...
More recently, other celebrities have died from the disease, including actor Patrick Swayze, Apple. Computer cofounder Steve Jobs, and El Diario/La Prensa ...

Using a Market Economy to Provision Compute ... - Research at Google
on the CPU, disk, memory, etc. that each job or job class can .... of other required resources or data, network connectivity, or ..... Just getting this is a very hard.

Using a Market Economy to Provision Compute ...
have proposed market-based pricing and allocation as solutions ..... Other important systems for accounting, billing, and contract .... Software Engineering, vol.